HL_6FYY_020

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

6FYY|1|2|G|765

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_020 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.3287

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6FYY|1|2|U|764
6FYY|1|2|G|765
6FYY|1|2|PSU|766
6FYY|1|2|U|767
6FYY|1|2|C|768
6FYY|1|2|A|769
6FYY|1|2|A|770
6FYY|1|2|A|771
6FYY|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24