HL_6FYY_026

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUUUUCUUAUGA

Length

12 nucleotides

Bulged bases

6FYY|1|2|U|1057, 6FYY|1|2|C|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|U|1053
6FYY|1|2|U|1054
6FYY|1|2|U|1055
6FYY|1|2|U|1056
6FYY|1|2|U|1057
6FYY|1|2|C|1058
6FYY|1|2|U|1059
6FYY|1|2|U|1060
6FYY|1|2|A|1061
6FYY|1|2|U|1062
6FYY|1|2|G|1063
6FYY|1|2|A|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27

Chain o

Eukaryotic translation initiation factor 3 subunit A

Chain q

eIF3c,Eukaryotic translation initiation factor 3 subunit C