3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
CACUUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FYY_033 not in the Motif Atlas
Geometric match to HL_2Y9H_003
Geometric discrepancy: 0.1816
The information below is about HL_2Y9H_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6FYY|1|2|C|1358
6FYY|1|2|A|1359
6FYY|1|2|C|1360
6FYY|1|2|U|1361
6FYY|1|2|U|1362
6FYY|1|2|G|1363

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
KLLA0D10659p
Chain Q
40S ribosomal protein S16
Chain T
KLLA0A07194p

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.139 s