HL_6FYY_034

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_034 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3732

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6FYY|1|2|U|1394
6FYY|1|2|U|1395
6FYY|1|2|U|1396
6FYY|1|2|C|1397
6FYY|1|2|A|1398
6FYY|1|2|A|1399
6FYY|1|2|G|1400

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

KLLA0B01474p

Chain c

40S ribosomal protein S28

Chain g

KLLA0E12277p