HL_6FYY_037

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6FYY|1|2|G|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_037 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.1415

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6FYY|1|2|G|1592
6FYY|1|2|U|1593
6FYY|1|2|C|1594
6FYY|1|2|A|1595
6FYY|1|2|U|1596
6FYY|1|2|C|1597
6FYY|1|2|A|1598
6FYY|1|2|G|1599
6FYY|1|2|C|1600

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

KLLA0A07194p

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29