HL_6FYY_038

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

6FYY|1|2|A|1691, 6FYY|1|2|G|1696, 6FYY|1|2|G|1697, 6FYY|1|2|C|1698, 6FYY|1|2|A|1699, 6FYY|1|2|A|1700, 6FYY|1|2|C|1701, 6FYY|1|2|U|1702, 6FYY|1|2|C|1703, 6FYY|1|2|C|1704, 6FYY|1|2|A|1705

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|G|1688
6FYY|1|2|A|1689
6FYY|1|2|G|1690
6FYY|1|2|A|1691
6FYY|1|2|U|1706
6FYY|1|2|C|1707
6FYY|1|2|U|1708
6FYY|1|2|C|1709
6FYY|1|2|G|1696
6FYY|1|2|G|1697
6FYY|1|2|C|1698
6FYY|1|2|A|1699
6FYY|1|2|A|1700
6FYY|1|2|C|1701
6FYY|1|2|U|1702
6FYY|1|2|C|1703
6FYY|1|2|C|1704
6FYY|1|2|A|1705
6FYY|1|2|U|1706
6FYY|1|2|C|1707
6FYY|1|2|U|1708
*
6FYY|1|2|C|1709

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6