HL_6G5H_029

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G5H_029 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2578

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6G5H|1|2|C|1460
6G5H|1|2|G|1461
6G5H|1|2|U|1462
6G5H|1|2|U|1463
6G5H|1|2|C|1464
6G5H|1|2|A|1465
6G5H|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17

Chain c

40S ribosomal protein S28

Chain g

Receptor of activated protein C kinase 1