HL_6G5I_019

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6G5I|1|2|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G5I_019 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2386

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6G5I|1|2|G|1054
6G5I|1|2|A|1055
6G5I|1|2|U|1056
6G5I|1|2|C|1057
6G5I|1|2|A|1058
6G5I|1|2|G|1059
6G5I|1|2|A|1060
6G5I|1|2|U|1061
6G5I|1|2|A|1062
6G5I|1|2|C|1063
6G5I|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1