HL_6G7Z_003

3D structure

PDB id

6G7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme with a shortened DP2 stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGGACGAUCC

Length

10 nucleotides

Bulged bases

6G7Z|1|A|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G7Z_003 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.348

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

6G7Z|1|A|G|100
6G7Z|1|A|G|101
6G7Z|1|A|G|102
6G7Z|1|A|A|103
6G7Z|1|A|C|104
6G7Z|1|A|G|105
6G7Z|1|A|A|106
6G7Z|1|A|U|107
6G7Z|1|A|C|108
6G7Z|1|A|C|109

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains