HL_6G7Z_007

3D structure

PDB id

6G7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme with a shortened DP2 stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GCUAAUCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G7Z_007 not in the Motif Atlas

Geometric match to HL_6UFG_007

Geometric discrepancy: 0.154

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

6G7Z|1|A|G|47
6G7Z|1|A|C|48
6G7Z|1|A|U|49
6G7Z|1|A|A|50
6G7Z|1|A|A|51
6G7Z|1|A|U|52
6G7Z|1|A|C|53
6G7Z|1|A|A|54
6G7Z|1|A|C|55

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains