HL_6GAW_003

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_003 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.1813

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6GAW|1|AA|C|88
6GAW|1|AA|U|89
6GAW|1|AA|U|90
6GAW|1|AA|A|91
6GAW|1|AA|A|92
6GAW|1|AA|A|93
6GAW|1|AA|G|94

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m

Chain Ad

Mitochondrial ribosomal protein S26

Chain Aj

28S ribosomal protein S34, mitochondrial