HL_6GAW_005

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6GAW|1|AA|U|149, 6GAW|1|AA|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_005 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2565

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6GAW|1|AA|G|147
6GAW|1|AA|C|148
6GAW|1|AA|U|149
6GAW|1|AA|C|150
6GAW|1|AA|A|151
6GAW|1|AA|A|152
6GAW|1|AA|C|153

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m

Chain Ac

Mitochondrial ribosomal protein S25