HL_6GAW_018

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACAUAA

Length

7 nucleotides

Bulged bases

6GAW|1|AA|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1852

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GAW|1|AA|U|728
6GAW|1|AA|A|729
6GAW|1|AA|C|730
6GAW|1|AA|A|731
6GAW|1|AA|U|732
6GAW|1|AA|A|733
6GAW|1|AA|A|734

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

28S ribosomal protein S9, mitochondrial

Chain Ag

Death associated protein 3