HL_6GAW_033

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

6GAW|1|BA|A|274, 6GAW|1|BA|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_033 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.3714

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GAW|1|BA|U|269
6GAW|1|BA|U|270
6GAW|1|BA|U|271
6GAW|1|BA|A|272
6GAW|1|BA|A|273
6GAW|1|BA|A|274
6GAW|1|BA|A|275
6GAW|1|BA|G|276
6GAW|1|BA|A|277
6GAW|1|BA|A|278

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BD

39S ribosomal protein L2, mitochondrial

Chain Ba

Mitochondrial ribosomal protein L37