HL_6GAW_040

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

6GAW|1|BA|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_040 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2406

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GAW|1|BA|C|509
6GAW|1|BA|C|510
6GAW|1|BA|U|511
6GAW|1|BA|A|512
6GAW|1|BA|A|513
6GAW|1|BA|A|514
6GAW|1|BA|A|515
6GAW|1|BA|G|516
6GAW|1|BA|C|517
6GAW|1|BA|A|518
6GAW|1|BA|G|519

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BK

Mitochondrial ribosomal protein L11

Chain BQ

39S ribosomal protein L16, mitochondrial