HL_6GAW_042
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAAACA
- Length
- 8 nucleotides
- Bulged bases
- 6GAW|1|BA|A|617
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAW_042 not in the Motif Atlas
- Geometric match to HL_5E6M_002
- Geometric discrepancy: 0.2939
- The information below is about HL_5E6M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55735.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GAW|1|BA|U|613
6GAW|1|BA|U|614
6GAW|1|BA|G|615
6GAW|1|BA|A|616
6GAW|1|BA|A|617
6GAW|1|BA|A|618
6GAW|1|BA|C|619
6GAW|1|BA|A|620
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- mL43
- Chain Bh
- 39S ribosomal protein L44, mitochondrial
- Chain Bm
- mL50
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bt
- Mitochondrial ribosomal protein L57
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