HL_6GAW_048

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAUUACUAGUAUU

Length

15 nucleotides

Bulged bases

6GAW|1|BA|A|853, 6GAW|1|BA|U|854, 6GAW|1|BA|U|855, 6GAW|1|BA|A|859, 6GAW|1|BA|U|863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|A|850
6GAW|1|BA|G|851
6GAW|1|BA|C|852
6GAW|1|BA|A|853
6GAW|1|BA|U|854
6GAW|1|BA|U|855
6GAW|1|BA|A|856
6GAW|1|BA|C|857
6GAW|1|BA|U|858
6GAW|1|BA|A|859
6GAW|1|BA|G|860
6GAW|1|BA|U|861
6GAW|1|BA|A|862
6GAW|1|BA|U|863
6GAW|1|BA|U|864

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

39S ribosomal protein L2, mitochondrial

Chain Ba

Mitochondrial ribosomal protein L37