HL_6GAW_063

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_063 not in the Motif Atlas

Geometric match to HL_2OIU_001

Geometric discrepancy: 0.0894

The information below is about HL_2OIU_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6GAW|1|BA|C|1461
6GAW|1|BA|G|1462
6GAW|1|BA|A|1463
6GAW|1|BA|A|1464
6GAW|1|BA|A|1465
6GAW|1|BA|G|1466

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial