HL_6GAZ_002

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_002 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3207

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6GAZ|1|AA|U|56
6GAZ|1|AA|A|57
6GAZ|1|AA|U|58
6GAZ|1|AA|C|59
6GAZ|1|AA|C|60
6GAZ|1|AA|G|61

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain Ad

Mitochondrial ribosomal protein S26

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

Mitochondrial ribosomal protein S34

Chain Ap

28S ribosomal protein S18b, mitochondrial