HL_6GAZ_005

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6GAZ|1|AA|U|149, 6GAZ|1|AA|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_005 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2515

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6GAZ|1|AA|G|147
6GAZ|1|AA|C|148
6GAZ|1|AA|U|149
6GAZ|1|AA|C|150
6GAZ|1|AA|A|151
6GAZ|1|AA|A|152
6GAZ|1|AA|C|153

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m, MRPS16

Chain Ac

Mitochondrial ribosomal protein S25