HL_6GAZ_007

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_007 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.1898

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6GAZ|1|AA|C|198
6GAZ|1|AA|G|199
6GAZ|1|AA|A|200
6GAZ|1|AA|A|201
6GAZ|1|AA|A|202
6GAZ|1|AA|G|203

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m, MRPS16

Chain Ad

Mitochondrial ribosomal protein S26

Chain Aj

Mitochondrial ribosomal protein S34

Chain Ap

28S ribosomal protein S18b, mitochondrial