HL_6GAZ_012

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UACAUAACAAA

Length

11 nucleotides

Bulged bases

6GAZ|1|AA|U|471, 6GAZ|1|AA|A|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAZ|1|AA|U|467
6GAZ|1|AA|A|468
6GAZ|1|AA|C|469
6GAZ|1|AA|A|470
6GAZ|1|AA|U|471
6GAZ|1|AA|A|472
6GAZ|1|AA|A|473
6GAZ|1|AA|C|474
6GAZ|1|AA|A|475
6GAZ|1|AA|A|476
6GAZ|1|AA|A|477

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AB

Mitochondrial ribosomal protein S2

Chain AE

Mitochondrial ribosomal protein S5

Chain AF

Mitochondrial ribosomal protein S6

Chain Ab

Mitochondrial ribosomal protein S23

Chain Am

Mitochondrial ribosomal protein S37

Chain An

Aurora kinase A interacting protein 1