HL_6GAZ_013

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACUG

Length

6 nucleotides

Bulged bases

6GAZ|1|AA|A|502, 6GAZ|1|AA|U|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_013 not in the Motif Atlas

Geometric match to HL_6TQB_001

Geometric discrepancy: 0.215

The information below is about HL_6TQB_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6GAZ|1|AA|C|501
6GAZ|1|AA|A|502
6GAZ|1|AA|A|503
6GAZ|1|AA|C|504
6GAZ|1|AA|U|505
6GAZ|1|AA|G|506

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AO

Mitochondrial ribosomal protein S15

Chain An

Aurora kinase A interacting protein 1