HL_6GAZ_015
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCAAUUC
- Length
- 8 nucleotides
- Bulged bases
- 6GAZ|1|AA|C|599, 6GAZ|1|AA|U|604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAZ_015 not in the Motif Atlas
- Geometric match to HL_4KR9_003
- Geometric discrepancy: 0.3841
- The information below is about HL_4KR9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_16651.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6GAZ|1|AA|G|598
6GAZ|1|AA|C|599
6GAZ|1|AA|C|600
6GAZ|1|AA|A|601
6GAZ|1|AA|A|602
6GAZ|1|AA|U|603
6GAZ|1|AA|U|604
6GAZ|1|AA|C|605
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain Ai
- Mitochondrial ribosomal protein S33
- Chain Ao
- Mitochondrial ribosomal protein S39
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