HL_6GAZ_016
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAAAA
- Length
- 6 nucleotides
- Bulged bases
- 6GAZ|1|AA|A|637, 6GAZ|1|AA|A|640
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAZ_016 not in the Motif Atlas
- Geometric match to HL_5TBW_040
- Geometric discrepancy: 0.0969
- The information below is about HL_5TBW_040
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_43793.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 50
Unit IDs
6GAZ|1|AA|U|636
6GAZ|1|AA|A|637
6GAZ|1|AA|A|638
6GAZ|1|AA|A|639
6GAZ|1|AA|A|640
6GAZ|1|AA|A|641
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AB
- Mitochondrial ribosomal protein S2
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AF
- Mitochondrial ribosomal protein S6
- Chain Ab
- Mitochondrial ribosomal protein S23
- Chain Am
- Mitochondrial ribosomal protein S37
Coloring options: