HL_6GAZ_018

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UACAUAA

Length

7 nucleotides

Bulged bases

6GAZ|1|AA|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1685

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GAZ|1|AA|U|728
6GAZ|1|AA|A|729
6GAZ|1|AA|C|730
6GAZ|1|AA|A|731
6GAZ|1|AA|U|732
6GAZ|1|AA|A|733
6GAZ|1|AA|A|734

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

Mitochondrial ribosomal protein S9

Chain Ag

Death associated protein 3