HL_6GAZ_025

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_025 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.1123

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6GAZ|1|AV|G|28
6GAZ|1|AV|C|29
6GAZ|1|AV|C|30
6GAZ|1|AV|C|31
6GAZ|1|AV|A|32
6GAZ|1|AV|U|33
6GAZ|1|AV|A|34
6GAZ|1|AV|C|35
6GAZ|1|AV|C|36

Current chains

Chain AV

P-site fMet-tRNAMet, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

Mitochondrial ribosomal protein S9

Chain AX

MT-CO3 mRNA, mitochondrial