HL_6GBM_002

3D structure

PDB id

6GBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of FUS-RRM bound to stem-loop RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACAAUUCU

Length

8 nucleotides

Bulged bases

6GBM|2|A|U|13, 6GBM|2|A|U|14, 6GBM|2|A|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GBM_002 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2621

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6GBM|2|A|A|9
6GBM|2|A|C|10
6GBM|2|A|A|11
6GBM|2|A|A|12
6GBM|2|A|U|13
6GBM|2|A|U|14
6GBM|2|A|C|15
6GBM|2|A|U|16

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*AP*GP*AP*UP*UP*AP*CP*AP*AP*UP*UP*CP*UP*AP*UP*UP*UP*GP*CP*C)-3')

Nearby chains

Chain B

RNA-binding protein FUS