HL_6GBM_003

3D structure

PDB id

6GBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of FUS-RRM bound to stem-loop RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACAAUUCU

Length

8 nucleotides

Bulged bases

6GBM|3|A|U|13, 6GBM|3|A|U|14, 6GBM|3|A|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GBM_003 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2532

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GBM|3|A|A|9
6GBM|3|A|C|10
6GBM|3|A|A|11
6GBM|3|A|A|12
6GBM|3|A|U|13
6GBM|3|A|U|14
6GBM|3|A|C|15
6GBM|3|A|U|16

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*AP*GP*AP*UP*UP*AP*CP*AP*AP*UP*UP*CP*UP*AP*UP*UP*UP*GP*CP*C)-3')

Nearby chains

Chain B

RNA-binding protein FUS