HL_6GBZ_071

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAGGGGGUCAUCCCGACUUACCAACC

Length

28 nucleotides

Bulged bases

6GBZ|1|A|U|887, 6GBZ|1|A|C|890, 6GBZ|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GBZ|1|A|G|875
6GBZ|1|A|C|876
6GBZ|1|A|A|877
6GBZ|1|A|A|878
6GBZ|1|A|G|879
6GBZ|1|A|G|880
6GBZ|1|A|G|881
6GBZ|1|A|G|882
6GBZ|1|A|G|883
6GBZ|1|A|U|884
6GBZ|1|A|C|885
6GBZ|1|A|A|886
6GBZ|1|A|U|887
6GBZ|1|A|C|888
6GBZ|1|A|C|889
6GBZ|1|A|C|890
6GBZ|1|A|G|891
6GBZ|1|A|A|892
6GBZ|1|A|C|893
6GBZ|1|A|U|894
6GBZ|1|A|U|895
6GBZ|1|A|A|896
6GBZ|1|A|C|897
6GBZ|1|A|C|898
6GBZ|1|A|A|899
6GBZ|1|A|A|900
6GBZ|1|A|C|901
6GBZ|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain M

50S ribosomal protein L16