HL_6GC4_009

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6GC4|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1355

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6GC4|1|A|C|305
6GC4|1|A|U|306
6GC4|1|A|G|307
6GC4|1|A|G|308
6GC4|1|A|A|309
6GC4|1|A|A|310
6GC4|1|A|A|311
6GC4|1|A|G|312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24