3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
6GC4|1|A|A|1614, 6GC4|1|A|A|1616, 6GC4|1|A|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GC4_038 not in the Motif Atlas
Homologous match to HL_4WF9_038
Geometric discrepancy: 0.0879
The information below is about HL_4WF9_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6GC4|1|A|C|1612
6GC4|1|A|G|1613
6GC4|1|A|A|1614
6GC4|1|A|C|1615
6GC4|1|A|A|1616
6GC4|1|A|C|1617
6GC4|1|A|A|1618
6GC4|1|A|G|1619

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain S
50S ribosomal protein L22

Coloring options:


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