HL_6GC4_058

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_058 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3446

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6GC4|1|A|A|2700
6GC4|1|A|U|2701
6GC4|1|A|G|2702
6GC4|1|A|C|2703
6GC4|1|A|C|2704
6GC4|1|A|A|2705
6GC4|1|A|A|2706
6GC4|1|A|U|2707

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17