HL_6GC6_023

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6GC6|1|A|A|781, 6GC6|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_023 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3646

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6GC6|1|A|U|779
6GC6|1|A|G|780
6GC6|1|A|A|781
6GC6|1|A|A|782
6GC6|1|A|A|783
6GC6|1|A|G|784
6GC6|1|A|G|785

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2