HL_6GC6_033

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GC6|1|A|A|1392, 6GC6|1|A|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_033 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2471

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6GC6|1|A|G|1389
6GC6|1|A|U|1390
6GC6|1|A|U|1391
6GC6|1|A|A|1392
6GC6|1|A|A|1393
6GC6|1|A|U|1394
6GC6|1|A|A|1395
6GC6|1|A|U|1396
6GC6|1|A|U|1397
6GC6|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23