HL_6GC6_041

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6GC6|1|A|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_041 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.3439

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GC6|1|A|C|1727
6GC6|1|A|C|1728
6GC6|1|A|U|1729
6GC6|1|A|C|1730
6GC6|1|A|G|1731
6GC6|1|A|C|1732
6GC6|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains