HL_6GC7_015

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCCGGCGAGGG

Length

11 nucleotides

Bulged bases

6GC7|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_015 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3443

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GC7|1|A|C|485
6GC7|1|A|C|486
6GC7|1|A|C|487
6GC7|1|A|G|488
6GC7|1|A|G|489
6GC7|1|A|C|490
6GC7|1|A|G|491
6GC7|1|A|A|492
6GC7|1|A|G|493
6GC7|1|A|G|494
6GC7|1|A|G|495

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24