3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GC8_014 not in the Motif Atlas
Homologous match to HL_4WF9_015
Geometric discrepancy: 0.1152
The information below is about HL_4WF9_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6GC8|1|A|C|462
6GC8|1|A|G|463
6GC8|1|A|U|464
6GC8|1|A|G|465
6GC8|1|A|A|466
6GC8|1|A|G|467

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4

Coloring options:


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