HL_6GC8_035

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GC8|1|A|A|1392, 6GC8|1|A|U|1396, 6GC8|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2108

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GC8|1|A|G|1389
6GC8|1|A|U|1390
6GC8|1|A|U|1391
6GC8|1|A|A|1392
6GC8|1|A|A|1393
6GC8|1|A|U|1394
6GC8|1|A|A|1395
6GC8|1|A|U|1396
6GC8|1|A|U|1397
6GC8|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23