HL_6GC8_040

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6GC8|1|A|A|1614, 6GC8|1|A|A|1616, 6GC8|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1414

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6GC8|1|A|C|1612
6GC8|1|A|G|1613
6GC8|1|A|A|1614
6GC8|1|A|C|1615
6GC8|1|A|A|1616
6GC8|1|A|C|1617
6GC8|1|A|A|1618
6GC8|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22