HL_6GC8_055

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

6GC8|1|A|U|2305, 6GC8|1|A|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_055 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.4338

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GC8|1|A|G|2303
6GC8|1|A|G|2304
6GC8|1|A|U|2305
6GC8|1|A|C|2306
6GC8|1|A|G|2307
6GC8|1|A|G|2308
6GC8|1|A|A|2309
6GC8|1|A|C|2310
6GC8|1|A|A|2311
6GC8|1|A|U|2312
6GC8|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5