HL_6GC8_072

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

6GC8|1|A|U|546, 6GC8|1|A|A|547, 6GC8|1|A|G|548, 6GC8|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_072 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2676

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6GC8|1|A|C|542
6GC8|1|A|G|543
6GC8|1|A|C|544
6GC8|1|A|U|545
6GC8|1|A|U|546
6GC8|1|A|A|547
6GC8|1|A|G|548
6GC8|1|A|G|549
6GC8|1|A|C|550
6GC8|1|A|G|551

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21