HL_6GQ1_012

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUGUUUUGUAUUUCAC

Length

16 nucleotides

Bulged bases

6GQ1|1|1|U|451, 6GQ1|1|1|A|486

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|G|443
6GQ1|1|1|U|444
6GQ1|1|1|G|445
6GQ1|1|1|U|446
6GQ1|1|1|U|447
6GQ1|1|1|U|448
6GQ1|1|1|U|449
6GQ1|1|1|G|450
6GQ1|1|1|U|451
6GQ1|1|1|A|486
6GQ1|1|1|U|487
6GQ1|1|1|U|488
6GQ1|1|1|U|489
6GQ1|1|1|C|490
6GQ1|1|1|A|491
6GQ1|1|1|C|492

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L6-A