HL_6GQ1_035
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UGAUUUUAUGCA
- Length
- 12 nucleotides
- Bulged bases
- 6GQ1|1|1|U|1568, 6GQ1|1|1|U|1569
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQ1|1|1|U|1564
6GQ1|1|1|G|1565
6GQ1|1|1|A|1566
6GQ1|1|1|U|1567
6GQ1|1|1|U|1568
6GQ1|1|1|U|1569
6GQ1|1|1|U|1570
6GQ1|1|1|A|1571
6GQ1|1|1|U|1572
6GQ1|1|1|G|1573
6GQ1|1|1|C|1574
6GQ1|1|1|A|1575
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S ribosomal protein L25
Coloring options: