HL_6GQ1_038

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

6GQ1|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_038 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1865

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|A|1679
6GQ1|1|1|G|1680
6GQ1|1|1|U|1681
6GQ1|1|1|U|1682
6GQ1|1|1|A|1683
6GQ1|1|1|U|1684
6GQ1|1|1|C|1685
6GQ1|1|1|U|1686
6GQ1|1|1|U|1687
6GQ1|1|1|U|1688
6GQ1|1|1|U|1689

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A