HL_6GQ1_069
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6GQ1|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQ1_069 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.2319
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6GQ1|1|1|C|3110
6GQ1|1|1|U|3111
6GQ1|1|1|G|3112
6GQ1|1|1|A|3113
6GQ1|1|1|A|3114
6GQ1|1|1|C|3115
6GQ1|1|1|G|3116
6GQ1|1|1|C|3117
6GQ1|1|1|C|3118
6GQ1|1|1|U|3119
6GQ1|1|1|C|3120
6GQ1|1|1|U|3121
6GQ1|1|1|A|3122
6GQ1|1|1|A|3123
6GQ1|1|1|G|3124
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
Coloring options: