HL_6GQ1_086

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

6GQ1|1|2|A|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_086 not in the Motif Atlas

Geometric match to HL_6CZR_089

Geometric discrepancy: 0.3782

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

6GQ1|1|2|C|491
6GQ1|1|2|A|492
6GQ1|1|2|U|493
6GQ1|1|2|U|494
6GQ1|1|2|C|495
6GQ1|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains