HL_6GQ1_087

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_087 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2301

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GQ1|1|2|A|520
6GQ1|1|2|A|521
6GQ1|1|2|U|522
6GQ1|1|2|G|523
6GQ1|1|2|U|524
6GQ1|1|2|A|525
6GQ1|1|2|A|526
6GQ1|1|2|A|527
6GQ1|1|2|U|528
6GQ1|1|2|A|529
6GQ1|1|2|C|530
6GQ1|1|2|C|531
6GQ1|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A