3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GUCAUCAGC
Length
9 nucleotides
Bulged bases
6GQ1|1|2|G|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GQ1_108 not in the Motif Atlas
Homologous match to HL_4V88_220
Geometric discrepancy: 0.2998
The information below is about HL_4V88_220
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6GQ1|1|2|G|1594
6GQ1|1|2|U|1595
6GQ1|1|2|C|1596
6GQ1|1|2|A|1597
6GQ1|1|2|U|1598
6GQ1|1|2|C|1599
6GQ1|1|2|A|1600
6GQ1|1|2|G|1601
6GQ1|1|2|C|1602

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AG
40S ribosomal protein S16-A
Chain AJ
40S ribosomal protein S19-A
Chain AK
40S ribosomal protein S20
Chain AT
40S ribosomal protein S29-A

Coloring options:


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