HL_6GQ1_116

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6GQ1|1|AX|U|16, 6GQ1|1|AX|G|19, 6GQ1|1|AX|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_116 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1777

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6GQ1|1|AX|C|13
6GQ1|1|AX|A|14
6GQ1|1|AX|G|15
6GQ1|1|AX|U|16
6GQ1|1|AX|U|17
6GQ1|1|AX|G|18
6GQ1|1|AX|G|19
6GQ1|1|AX|G|20
6GQ1|1|AX|A|21
6GQ1|1|AX|G|22

Current chains

Chain AX

Transfer RNA - Phe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA